Data submission Form

Use this form to submit DNA or protein sequences to Meta-MEME. In addition to your sequences, Meta-MEME requires as input a MEME motif analysis of your data. Using the output from MEME, Meta-MEME will build a motif-based hidden Markov model of your sequences and will use the model to produce a multiple alignment of your sequences and to search a sequence database for homologous sequences.

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Inputs

Please enter the following inputs:

1. The name of a file containing a set of MEME motifs from your sequences:
   
   
2. The name of a file containing a set of DNAprotein sequences in an acceptable format
   
   
3. [Optional] Description of your sequences:
   
4. [Optional]The sequence database you want to search:
   Protein Databank NCBI non-redundant database New NCBI entries this month Yeast (S. cerevisiae) genome C. elegans genome E. coli genome SWISS-PROT (protein only) Genpept (protein only) NCBI non-redundant EST database (DNA only) NCBI non-redundant STS database (DNA only) Vector subset of Genbank (DNA only) Eukaryotic Promoter Database (DNA only)

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Outputs

Please select the desired output(s).

1. A motif-based hidden Markov model.
   
2. An analysis of the motif occurrences in your sequences.
3. A list of homologous sequences from the selected database.
4. Maximum number of sequences to return (optional)

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Please send comments and questions to cegrant@u.washington.edu